GWAS.BAYES

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see GWAS.BAYES.

GWAS for Selfing Species


Bioconductor version: 3.12

This package is built to perform GWAS analysis for selfing species. The research related to this package was supported in part by National Science Foundation Award 1853549.

Author: Jake Williams [aut, cre], Marco Ferreira [aut], Tieming Ji [aut]

Maintainer: Jake Williams <jwilliams at vt.edu>

Citation (from within R, enter citation("GWAS.BAYES")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GWAS.BAYES")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GWAS.BAYES")
GWAS.BAYES HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews AssayDomain, SNP, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-2 | GPL-3
Depends R (>= 4.0), Rcpp (>= 1.0.3), RcppEigen (>= 0.3.3.7.0), GA (>= 3.2), caret (>= 6.0-86), ggplot2 (>= 3.3.0), doParallel (>= 1.0.15), memoise (>= 1.1.0), reshape2 (>= 1.4.4), Matrix (>= 1.2-18)
Imports
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown, formatR, rrBLUP, qqman
Linking To RcppEigen (>= 0.3.3.7.0), Rcpp (>= 1.0.3)
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GWAS.BAYES_1.0.0.tar.gz
Windows Binary GWAS.BAYES_1.0.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) GWAS.BAYES_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GWAS.BAYES
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GWAS.BAYES
Bioc Package Browser https://code.bioconductor.org/browse/GWAS.BAYES/
Package Short Url https://bioconductor.org/packages/GWAS.BAYES/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive