GGBase

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GGBase.

GGBase infrastructure for genetics of gene expression package GGtools


Bioconductor version: 3.12

infrastructure

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGBase")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GGBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGBase")
GGBase -- infrastructure for GGtools, genetics of gene expression HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Genetics, Infrastructure, Software
Version 3.52.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License Artistic-2.0
Depends R (>= 2.14), methods, snpStats
Imports limma, genefilter, Biobase, BiocGenerics(>= 0.35.3), S4Vectors, IRanges, Matrix, AnnotationDbi, digest, GenomicRanges, SummarizedExperiment
System Requirements
URL
See More
Suggests GGtools, illuminaHumanv1.db, knitr
Linking To
Enhances
Depends On Me ceu1kg, ceu1kgv, ceuhm3, dsQTL, GGdata, GGtools, hmyriB36, yri1kgv
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GGBase_3.52.0.tar.gz
Windows Binary GGBase_3.52.0.zip
macOS 10.13 (High Sierra) GGBase_3.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GGBase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GGBase
Package Short Url https://bioconductor.org/packages/GGBase/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive