DiffLogo

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see DiffLogo.

DiffLogo: A comparative visualisation of biooligomer motifs


Bioconductor version: 3.12

DiffLogo is an easy-to-use tool to visualize motif differences.

Author: c( person("Martin", "Nettling", role = c("aut", "cre"), email = "martin.nettling@informatik.uni-halle.de"), person("Hendrik", "Treutler", role = c("aut", "cre"), email = "hendrik.treutler@ipb-halle.de"), person("Jan", "Grau", role = c("aut", "ctb"), email = "grau@informatik.uni-halle.de"), person("Andrey", "Lando", role = c("aut", "ctb"), email = "dronte@autosome.ru"), person("Jens", "Keilwagen", role = c("aut", "ctb"), email = "jens.keilwagen@julius-kuehn.de"), person("Stefan", "Posch", role = "aut", email = "posch@informatik.uni-halle.de"), person("Ivo", "Grosse", role = "aut", email = "grosse@informatik.uni-halle.de"))

Maintainer: Hendrik Treutler<hendrik.treutler at gmail.com>

Citation (from within R, enter citation("DiffLogo")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DiffLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DiffLogo")
Basics of the DiffLogo package PDF R Script
Reference Manual PDF

Details

biocViews Alignment, MotifAnnotation, MultipleComparison, SequenceMatching, Software, Visualization
Version 2.14.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL (>= 2)
Depends R (>= 3.4), stats, cba
Imports grDevices, graphics, utils, tools
System Requirements
URL https://github.com/mgledi/DiffLogo/
Bug Reports https://github.com/mgledi/DiffLogo/issues
See More
Suggests knitr, testthat, seqLogo, MotifDb
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DiffLogo_2.14.0.tar.gz
Windows Binary DiffLogo_2.14.0.zip
macOS 10.13 (High Sierra) DiffLogo_2.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DiffLogo
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DiffLogo
Bioc Package Browser https://code.bioconductor.org/browse/DiffLogo/
Package Short Url https://bioconductor.org/packages/DiffLogo/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive