Autotuner

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Autotuner.

Automated parameter selection for untargeted metabolomics data processing


Bioconductor version: 3.12

This package is designed to help faciliate data processing in untargeted metabolomics. To do this, the algorithm contained within the package performs statistical inference on raw data to come up with the best set of parameters to process the raw data.

Author: Craig McLean

Maintainer: Craig McLean <craigmclean23 at gmail.com>

Citation (from within R, enter citation("Autotuner")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Autotuner")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Autotuner")
Autotuner HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews MassSpectrometry, Metabolomics, Software
Version 1.4.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License MIT + file LICENSE
Depends R (>= 4.0.0), methods, Biobase, MSnbase(>= 2.14.2)
Imports RColorBrewer, mzR, assertthat, scales, entropy, cluster, grDevices, graphics, stats, utils
System Requirements
URL https://github.com/crmclean/Autotuner/
Bug Reports https://github.com/crmclean/Autotuner/issues
See More
Suggests testthat (>= 2.1.0), covr, devtools, knitr, rmarkdown, mtbls2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Autotuner_1.4.0.tar.gz
Windows Binary Autotuner_1.4.0.zip
macOS 10.13 (High Sierra) Autotuner_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Autotuner
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Autotuner
Bioc Package Browser https://code.bioconductor.org/browse/Autotuner/
Package Short Url https://bioconductor.org/packages/Autotuner/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive