% -*- mode: noweb; noweb-default-code-mode: R-mode; -*- %\VignetteIndexEntry{pumadata User Guide} %\VignetteKeywords{Preprocessing, Affymetrix, Clustering} %\VignetteDepends{Biobase} %\VignettePackage{pumadata} %documentclass[12pt, a4paper]{article} \documentclass[12pt]{article} \usepackage{amsmath,pstricks} % With MikTeX 2.9, using pstricks also requires using auto-pst-pdf or running % pdflatex will fail. Note that using auto-pst-pdf requires to set environment % variable MIKTEX_ENABLEWRITE18=t on Windows, and to set shell_escape = t in % texmf.cnf for Tex Live on Unix/Linux/Mac. \usepackage{auto-pst-pdf} \usepackage{hyperref} \usepackage{float} \usepackage[authoryear,round]{natbib} \restylefloat{figure} \textwidth=6.2in \textheight=8.5in %\parskip=.3cm \oddsidemargin=.1in \evensidemargin=.1in \headheight=-.3in \newcommand{\scscst}{\scriptscriptstyle} \newcommand{\scst}{\scriptstyle} \newcommand{\Rfunction}[1]{{\texttt{#1}}} \newcommand{\Robject}[1]{{\texttt{#1}}} \newcommand{\Rpackage}[1]{{\textit{#1}}} \newcommand{\puma}{\Rpackage{puma}} \newcommand{\limma}{\Rpackage{limma}} \author{Richard Pearson} \begin{document} \title{pumadata User Guide} \maketitle \sloppy \SweaveOpts{keep.source=TRUE} <>= options(width = 70) @ \section{Introduction} This is a simple data package, to be used with the \Rpackage{puma} package. Please refer to the \Rpackage{puma} vignette for more details. \end{document}