%\VignetteIndexEntry{FunciSNP Vignette} %\VignetteDepends{FunciSNP.data} %\VignetteKeywords{SNP} %\VignetteKeywords{Functional} %\VignetteKeywords{GWAS} %\VignettePackage{FunciSNP.data} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \documentclass[12pt,fullpage]{article} \usepackage{amsmath,epsfig,fullpage} \usepackage{hyperref} \usepackage{url} \usepackage[authoryear,round]{natbib} %\usepackage[OT1]{fonitenc} \usepackage{Sweave} \usepackage{textcomp} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \newcommand{\Rfunction}[1]{{\texttt{#1}}} \newcommand{\Robject}[1]{{\texttt{#1}}} \newcommand{\Rpackage}[1]{{\textit{#1}}} \newcommand{\Rclass}[1]{{\textit{#1}}} \newcommand{\Rmethod}[1]{{\textit{#1}}} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \author{Simon G. Coetzee$^\circ$$^\ddagger$\footnote{scoetzee NEAR gmail POINT com}, Suhn K. Rhie$^\ddagger$, Benjamin P. Berman$^\ddagger$,\\Gerhard A. Coetzee$^\ddagger$ and Houtan Noushmehr$^\circ$$^\ddagger$\footnote{houtan NEAR usp POINT br}} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \begin{document} \title{Using the FunciSNP data package\\`FunciSNP: An R/Bioconductor Tool \\ Integrating Functional Non-coding Datasets with Genetic Association Studies to\\ Identify Candidate Regulatory SNPs'} \maketitle %%% Affiliation %%% \begin{center} $^\circ$Faculdade de Medicina de Ribeir$\tilde{a}$o Preto\\Departmento de Gen$\acute{e}$tica\\Universidade de S$\tilde{a}$o Paulo\\Ribeir$\tilde{a}$o Preto, S$\tilde{a}$o Paulo, BRASIL\\ -- \\ $^\ddagger$Norris Cancer Center\\Keck School of Medicine\\University of Southern California\\Los Angeles, CA, USA \end{center} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \tableofcontents %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \sloppy \SweaveOpts{keep.source=TRUE} <>= options(width = 80) @ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \section{Introduction} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% This is a simple data package, to be used with the \Rpackage{FunciSNP} package. Please refer to the \Rpackage{FunciSNP} vignette for more details. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \section{Contact information} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Questions or comments, please contact Simon G. Coetzee (scoetzee NEAR gmail POINT com) or Houtan Noushmehr, PhD (houtan NEAR usp POINT br). %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \section{sessionInfo} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% <>= toLatex(sessionInfo()) @ Our recent paper describing FunciSNP and FunciSNP.data can be found in the Journal Nucleic Acids Research (doi:10.1093/nar/gks542).\\ This document was proudly made using \LaTeX and \textbf{Sweave}. \end{document}