etec16s

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see etec16s.

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment


Bioconductor version: 3.11

16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.

Author: Joseph N. Paulson

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>

Citation (from within R, enter citation("etec16s")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("etec16s")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("etec16s")
etec16s PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, MicrobiomeData, SequencingData
Version 1.16.0
License Artistic-2.0
Depends R (>= 3.3), Biobase, metagenomeSeq(>= 1.12.0)
Imports
System Requirements
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Suggests
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package etec16s_1.16.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/etec16s
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/etec16s
Package Short Url https://bioconductor.org/packages/etec16s/
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