SingleCellMultiModal

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see SingleCellMultiModal.

Integrating Multi-modal Single Cell Experiment datasets


Bioconductor version: 3.11

SingleCellMultiModal is an ExperimentHub package that serves multiple datasets obtained from GEO and other sources and represents them as MultiAssayExperiment objects. The current focus is on datasets that use new technologies such as scNMT and scM&T.

Author: Marcel Ramos [aut, cre] , Kelly Eckenrode [aut], Levi Waldron [aut]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("SingleCellMultiModal")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SingleCellMultiModal")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SingleCellMultiModal")
scNMT Mouse Gastrulation HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, GEO, ReproducibleResearch, SingleCellData
Version 1.0.0
License Artistic-2.0
Depends R (>= 4.0.0), MultiAssayExperiment
Imports AnnotationHub, BiocFileCache, ExperimentHub, rappdirs, utils
System Requirements
URL
Bug Reports https://github.com/waldronlab/SingleCellMultiModal/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SingleCellMultiModal_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/SingleCellMultiModal
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SingleCellMultiModal
Package Short Url https://bioconductor.org/packages/SingleCellMultiModal/
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