survcomp
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see survcomp.
Performance Assessment and Comparison for Survival Analysis
Bioconductor version: 3.11
Assessment and Comparison for Performance of Risk Prediction (Survival) Models.
Author: Benjamin Haibe-Kains, Markus Schroeder, Catharina Olsen, Christos Sotiriou, Gianluca Bontempi, John Quackenbush, Samuel Branders, Zhaleh Safikhani
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>, Markus Schroeder <markus.schroeder at ucdconnect.ie>, Catharina Olsen <colsen at ulb.ac.be>
citation("survcomp")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("survcomp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("survcomp")| SurvComp: a package for performance assessment and comparison for survival analysis | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, Software, Visualization |
| Version | 1.38.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | Artistic-2.0 |
| Depends | survival, prodlim, R (>= 3.4) |
| Imports | ipred, SuppDists, KernSmooth, survivalROC, bootstrap, grid, rmeta, stats, graphics |
| System Requirements | |
| URL | http://www.pmgenomics.ca/bhklab/ |
See More
| Suggests | Hmisc, CPE, clinfun, xtable, Biobase, BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | genefu |
| Imports Me | GenRank, metaseqR2 |
| Suggests Me | breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, glmSparseNet, metaseqR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | survcomp_1.38.0.tar.gz |
| Windows Binary | survcomp_1.38.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | survcomp_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/survcomp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/survcomp |
| Bioc Package Browser | https://code.bioconductor.org/browse/survcomp/ |
| Package Short Url | https://bioconductor.org/packages/survcomp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |