roar

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see roar.

Identify differential APA usage from RNA-seq alignments


Bioconductor version: 3.11

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

Citation (from within R, enter citation("roar")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("roar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("roar")
Identify differential APA usage from RNA-seq alignments PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-3
Depends R (>= 3.0.1)
Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb
System Requirements
URL https://github.com/vodkatad/roar/
See More
Suggests RNAseqData.HNRNPC.bam.chr14, testthat
Linking To
Enhances
Depends On Me
Imports Me XBSeq
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package roar_1.24.0.tar.gz
Windows Binary roar_1.24.0.zip
macOS 10.13 (High Sierra) roar_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/roar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/roar
Bioc Package Browser https://code.bioconductor.org/browse/roar/
Package Short Url https://bioconductor.org/packages/roar/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive