maser

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see maser.

Mapping Alternative Splicing Events to pRoteins


Bioconductor version: 3.11

This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS.

Author: Diogo F.T. Veiga [aut, cre]

Maintainer: Diogo F.T. Veiga <diogof.veiga at gmail.com>

Citation (from within R, enter citation("maser")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("maser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("maser")
Introduction HTML R Script
Mapping protein features to splicing events HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews AlternativeSplicing, Software, Transcriptomics, Visualization
Version 1.6.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), ggplot2, GenomicRanges
Imports dplyr, rtracklayer, reshape2, Gviz, DT, GenomeInfoDb, stats, utils, IRanges, methods, BiocGenerics, parallel, data.table
System Requirements
URL https://github.com/DiogoVeiga/maser
Bug Reports https://github.com/DiogoVeiga/maser/issues
See More
Suggests testthat, knitr, rmarkdown, BiocStyle, AnnotationHub
Linking To
Enhances
Depends On Me
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Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package maser_1.6.0.tar.gz
Windows Binary maser_1.6.0.zip
macOS 10.13 (High Sierra) maser_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/maser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/maser
Bioc Package Browser https://code.bioconductor.org/browse/maser/
Package Short Url https://bioconductor.org/packages/maser/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive