Sushi

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Sushi.

Tools for visualizing genomics data


Bioconductor version: 3.11

Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures

Author: Douglas H Phanstiel <dphansti at stanford.edu>

Maintainer: Douglas H Phanstiel <dphansti at stanford.edu>

Citation (from within R, enter citation("Sushi")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Sushi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Sushi")
Sushi PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Genetics, HiC, Infrastructure, Sequencing, Software, Visualization
Version 1.26.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL (>= 2)
Depends R (>= 2.10), zoo, biomaRt
Imports graphics, grDevices
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me diffloop, Ularcirc, vasp
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Sushi_1.26.0.tar.gz
Windows Binary Sushi_1.26.0.zip
macOS 10.13 (High Sierra) Sushi_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Sushi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Sushi
Bioc Package Browser https://code.bioconductor.org/browse/Sushi/
Package Short Url https://bioconductor.org/packages/Sushi/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive