IPPD
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see IPPD.
Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching
Bioconductor version: 3.11
The package provides functionality to extract isotopic peak patterns from raw mass spectra. This is done by fitting a large set of template basis functions to the raw spectrum using either nonnegative least squares or least absolute deviation fittting. The package offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the data. The package also provides functionality to process LCMS runs.
Author: Martin Slawski <ms at cs.uni-saarland.de>, Rene Hussong <rene.hussong at uni.lu>, Andreas Hildebrandt <andreas.hildebrandt at uni-mainz.de>, Matthias Hein <hein at cs.uni-saarland.de>
Maintainer: Martin Slawski <ms at cs.uni-saarland.de>
citation("IPPD")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IPPD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IPPD")| IPPD Manual | R Script | |
| Reference Manual |
Details
| biocViews | Proteomics, Software |
| Version | 1.35.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | GPL (version 2 or later) |
| Depends | R (>= 2.12.0), MASS, Matrix, XML, digest, bitops |
| Imports | methods, stats, graphics |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IPPD_1.35.0.tar.gz |
| Windows Binary | IPPD_1.35.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/IPPD |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IPPD |
| Bioc Package Browser | https://code.bioconductor.org/browse/IPPD/ |
| Package Short Url | https://bioconductor.org/packages/IPPD/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |