%\VignetteIndexEntry{CRCL18}
%\VignetteKeywords{ExperimentData}
%\VignetteDepends{CRCL18}
%\VignettePackage{CRCL18}
\documentclass[a4paper]{article}

\usepackage{amsmath,amssymb}
\usepackage{graphicx}
\usepackage{Sweave}

\begin{document}

\title{CRC line line 18 dataset}

\author{Claudio Isella, Laura Cantini, Simone Chiola and Enzo Medico}

\maketitle

\vspace{12pt}

\section{Introduction}
The package contain data objects of miRNA and mRNA profile
of 18 colorectal cancer cell line classfied according to 
CRC-Assigner \cite{Sadanandam}.
The \emph{ExpressionSet} include samples information (phenoData) and probe (genes) information.
Data were respectivelly for mRNA and miRNA with Illumina BeadChip and Illumina smallTruSeq method.


<<Library, results=hide>>=
library(CRCL18)
@

\section{Introduction}
both the \emph{ExpressionSet} can be loaded as it follows

<<Library>>=
data(CRCLmrna)
data(CRCLmirna)
@



\section{References}
\addcontentsline{toc}{chapter}{References}
\begin{thebibliography}
\scriptsize{

\bibitem{TCGA}       Network, C.G.A.
                        \emph{Network, C.G.A. Comprehensive molecular characterization of human colon and rectal cancer}
                        Nature 487, 330-7 (2012).
}
\end{thebibliography}
\end{document}