msdata

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see msdata.

Various Mass Spectrometry raw data example files


Bioconductor version: 3.10

Ion Trap positive ionization mode data in mzData file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzData, mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be> with contriutions from Johannes Rainer

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("msdata")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ExperimentData, MassSpectrometryData
Version 0.26.0
License GPL (>= 2)
Depends R (>= 2.10)
Imports
System Requirements
URL
See More
Suggests xcms, mzR, MSnbase
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me IPO, MSnbase, mzR, peakPantheR, RforProteomics, xcms
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msdata_0.26.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/msdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msdata
Package Short Url https://bioconductor.org/packages/msdata/
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