genomationData

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see genomationData.

Experimental data for showing functionalities of the genomation package


Bioconductor version: 3.10

The package contains Chip Seq, Methylation and Cage data, downloaded from Encode

Author: Altuna Akalin, Vedran Franke

Maintainer: Vedran Franke <vedran.franke at gmail.com>

Citation (from within R, enter citation("genomationData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("genomationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomationData")
genomationData PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeqData, ChipOnChipData, ENCODE, ExperimentData, Genome, SequencingData, StemCell
Version 1.18.0
License GPL-3
Depends
Imports
System Requirements
URL
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Suggests knitr
Linking To
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Depends On Me
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Suggests Me genomation
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genomationData_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/genomationData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genomationData
Package Short Url https://bioconductor.org/packages/genomationData/
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