JctSeqData

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see JctSeqData.

Example Junction Count data for use with JunctionSeq


Bioconductor version: 3.10

Junction count data from an example dataset taken from a subset of the RNA-seq reads from six samples. Data was subsampled and modified to provide edge cases for testing and to reduce file sizes.

Author: Stephen Hartley [aut, cre] (PhD)

Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>

Citation (from within R, enter citation("JctSeqData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("JctSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JctSeqData")
Example Walkthrough PDF
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, GEO, Genome, RNASeqData, Rattus_norvegicus_Data, RepositoryData
Version 1.16.0
License file LICENSE
Depends R (>= 3.3)
Imports
System Requirements
URL http://hartleys.github.io/JunctionSeq/
Bug Reports http://github.com/hartleys/JunctionSeq/issues
See More
Suggests knitr, BiocStyle, DESeq2, DEXSeq, edgeR, JunctionSeq
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me JunctionSeq
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package JctSeqData_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/JctSeqData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/JctSeqData
Package Short Url https://bioconductor.org/packages/JctSeqData/
Package Downloads Report Download Stats