greengenes13.5MgDb
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see greengenes13.5MgDb.
Greengenes 13.5 16S rRNA Database Annotation Data
Bioconductor version: 3.10
Metagenome annotation package with for the Greengenes 16S rRNA Database version 13.5. Contains a MgDb-class object, defined in the metagenomeFeatures package.
Author: Nathan D. Olson <nolson at umias.umd.edu>, Joseph Nathaniel Paulson, Hector Corrada-Bravo
Maintainer: Nathan D. Olson <nolson at umiacs.umd.edu>
citation("greengenes13.5MgDb")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("greengenes13.5MgDb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | AnnotationData, Microbiome |
| Version | 2.0.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.4.0), methods |
| Imports | metagenomeFeatures(>= 1.9.9) |
| System Requirements | |
| URL | https://github.com/HCBravoLab/greengenes13.5MgDb |
| Bug Reports | https://github.com/HCBravoLab/greengenes13.5MgDb/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | greengenes13.5MgDb_2.0.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/greengenes13.5MgDb/ |
| Package Downloads Report | Download Stats |