rama
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see rama.
Robust Analysis of MicroArrays
Bioconductor version: 3.10
Robust estimation of cDNA microarray intensities with replicates. The package uses a Bayesian hierarchical model for the robust estimation. Outliers are modeled explicitly using a t-distribution, and the model also addresses classical issues such as design effects, normalization, transformation, and nonconstant variance.
Author: Raphael Gottardo
Maintainer: Raphael Gottardo <raph at stat.ubc.ca>
citation("rama")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rama")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rama")| rama Tutorial | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.60.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.5.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | bridge |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rama_1.60.0.tar.gz |
| Windows Binary | rama_1.60.0.zip |
| Mac OS X 10.11 (El Capitan) | rama_1.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rama |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rama |
| Bioc Package Browser | https://code.bioconductor.org/browse/rama/ |
| Package Short Url | https://bioconductor.org/packages/rama/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |