CoverageView

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see CoverageView.

Coverage visualization package for R


Bioconductor version: 3.10

This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome

Author: Ernesto Lowy

Maintainer: Ernesto Lowy <ernestolowy at gmail.com>

Citation (from within R, enter citation("CoverageView")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CoverageView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoverageView")
Easy visualization of the read coverage PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeq, ImmunoOncology, RNASeq, Sequencing, Software, Technology, Visualization
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License Artistic-2.0
Depends R (>= 2.10), methods, Rsamtools(>= 1.19.17), rtracklayer
Imports S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, GenomicAlignments, parallel, tools
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CoverageView_1.24.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) CoverageView_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CoverageView
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CoverageView
Bioc Package Browser https://code.bioconductor.org/browse/CoverageView/
Package Short Url https://bioconductor.org/packages/CoverageView/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive