## ----style, echo = FALSE, results = 'asis'------------------------------- BiocStyle::markdown(css.files = "my.css") ## ----code, echo = FALSE-------------------------------------------------- code <- function(...) { cat(paste(..., sep = "\n")) } code2 <- function(...) { cat(paste("```markdown", ..., "\n", "```", sep = "\n")) } ## ----, echo = FALSE , results = 'asis'----------------------------------- code("```{r style, echo = FALSE, results = 'asis'}", "BiocStyle::markdown()", "```") ## ----macro, echo=FALSE--------------------------------------------------- macro <- function(name, pkg, description) sprintf('`` `r %s("%s")` `` %s %s', name, pkg, description, do.call(name, list(pkg))) ## ----figure, fig.width=4.0, fig.height=4.4------------------------------- v = seq(0, 60i, length = 1000) plot(abs(v)*exp(v), type = "l", col = "Royalblue") ## ----, echo = FALSE, results = 'asis'------------------------------------ code("```{r style, echo = FALSE, results = 'asis'}", "BiocStyle::markdown(css.files = c('my.css'))", "```") ## ----, echo = FALSE , results = 'asis'----------------------------------- code("```{.sh}", "ls", "```") ## ----, echo = FALSE , results = 'asis'----------------------------------- cat(BiocStyle:::.print.file("my.css")) ## ----, echo = FALSE , results = 'asis'----------------------------------- cat("") ## ----sessionInfo, echo=FALSE--------------------------------------------- sessionInfo()