New in version 1.0.2, 16 November 2014: * bug fix in fragment generation (last 2 based of transcript were never sequenced) New in version 1.0.1, 5 November 2014: * corrected size parameter specification in simulate_experiment. (If size was provided as vector, subsets taken were too short, and error was thrown). Version 0.99.2 became part of bioc-release and was released as Version 1.0.0. New in version 0.99.2, 22 September 2014: * fixed bug where read names were incorrect in output fasta files * updated vignette * added biocViews * fixed coding style Package submission, version 0.99.0, 18 July 2014